ARUP Journal Article Publications Archive

The Institute for Clinical and Experimental Research® is focused on the development of new diagnostic assays in a wide range of disciplines. Researchers at the institute regularly publish in respected, peer-reviewed journals, give presentations at national and international organizations, author books and book chapters, and develop new tests.

Publications by Year

Recent Publications

Schlaberg R, Barrett A, Edes K, Graves M, Paul L, Rychert J, Lopansri BK, Leung DT. Fecal host transcriptomics for non-invasive human mucosal immune profiling: proof of concept in clostridium difficile infection.​ Pathogens & Immunity. 3(2):164-180.

Mollaoglu G, Jones A, Wait SJ, Mukhopadhyay A, Jeong S, Arya R, Camolotto SA, Mosbruger TL, Stubben CJ, Conley CJ, Bhutkar A, Vahrenkamp JM, Berrett KC, Cessna MH, Lane TE, Witt BL, Salama ME, Gertz J, Jones KB, Snyder EL, Oliver TG. The Lineage-Defining Transcription Factors SOX2 and NKX2-1 Determine Lung Cancer Cell Fate and Shape the Tumor Immune Microenvironment. Immunity.​ 49(4):764-779.e9.

Timbrook TT, Spivak ES, Hanson KE. Current and Future Opportunities for Rapid Diagnostics in Antimicrobial Stewardship.​ The Medical Clinics of North America. 102(5):899-911.

Lu J, Genzen JR, Grenache DG. Development of an enzymatic assay to measure lactate in perchloric acid-precipitated cerebrospinal fluid.​ Clinica Chimica Acta. 483:142-144.

La'ulu SL, Kalp KJ, Straseski JA. How Low Can You Go? Analytical Performance of Five Automated​ Testosterone Immunoassays. Clinical Biochemistry. 58:64-71.

Yuzyuk T, Lozier B, Schwarz EL, Viau K, Kish-Trier E, De Biase I. Intra-individual variability of long-chain fatty acids (C12-C24) in plasma and red blood cells. Prostaglandins, Leukotrienes and Essential Fatty Acids. 135 (2018) 30-38.

Spörndly-Neesa E, Boberg J, Ekstedt E, Holm L, Fakhrzadeh A, Dunderd L, Kushnir MM, Lejonklou MH, Lind M. Low-dose exposure to Bisphenol A during development has limited effects on male​ ​reproduction in prepubertal and aging Fischer 344 rats. Reproductive Toxicology. 81:196-206.

Vaughn CP, Costa JL, Feilotter HE, Petraroli R, Bagai V, Rachiglio AM, Marino FZ, Tops B, Kurth HM, Sakai K, Mafficini A, Bastien RRL, Reiman A, Le Corre D, Boag A, Crocker S, Bihl M, Hirschmann A, Scarpa A, Machado JC, Blons H, Sheils O, Bramlett K, Ligtenberg MJL, Cree IA, Normanno N, Nishio K, Laurent-Puig P​. Simultaneous Detection of Lung Fusions using a Multiplex RT-PCR Next Generation Sequencing-based Approach: A Multi-Institutional Research Study​.  BMC Cancer​. 18(1):828.

Hellwig S, Nix DA, Gligorich KM, O'Shea JM, Thomas A, Fuertes CL, Bhetariya PJ, Marth GT, Bronner MP, Underhill HR. Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing​. PLoS One. 13(7): e0197333. July 2018.

Johnson DN, Furtado LV, Long BC, Zhen CJ, Wurst M, Mujacic I, Kadri S, Segal JP, Antic T, Cipriani NA. Noninvasive Follicular Thyroid Neoplasms With Papillary-Like Nuclear Features (NIFTPs) Are Genetically and Biologically Similar to Adenomatous Nodules and Distinct From Papillary Thyroid Carcinomas With Extensive Follicular Growth. Archives of Pathology and Laboratory Medicine. 142(7):838-850. July 2018.

Margraf RL, Durtschi J, Krock B, Newcomb TM, Bonkowsky J, Voelkerding KV, Bayrak-Toydemir P, Lutz RE, Swoboda KJ. Novel PLP1 Mutations Identified with Next-Generation Sequencing Expand the Spectrum of PLP1-Associated Leukodystrophy Clinical Phenotypes. Child Neurology Open. 5:2329048X18789282. July 2018.

​​Schmidt RL, LoPresti J, McDermott MT MD, Zick SM, Straseski JA. DDoes Reverse Triiodothyronine Testing Have Clinical Utility? An Analysis of Practice Variation Based on Data from a National Reference Laboratory. Thyroid. 28(7):842-848. July 2018.

​Tuttle KD, Krovi SH, Zhang J, Bedel R, Harmacek L, Peterson LK, Dragone LL, Lefferts A, Halluszczak C, Riemondy K, Hesselberth JR, Rao A, O'Connor BP, Marrack P, Scott-Browne J, Gapin L. TCR signal strength controls thymic differentiation of iNKT cell subsets. Nature Communications. 9(1):2650. July 2018.

Body BA, Beard MA, Slechta ES, Hanson KE, Barker AP, Babady NE, McMillen T, Tang YW, Brown-Elliott BA, Iakhiaeva E, Vasireddy R, Vasireddy S, Smith T, Wallace RJ Jr, Turner S, Curtis L, Butler-Wu S, Rychert J. Evaluation of the Vitek MS v3.0 Matrix-Assisted Laser Desorption Ionization--Time of Flight Mass Spectrometry System for Identification of Mycobacterium and Nocardia species. Journal of Clinical Microbiology. Vol. 56, No. 6.

Philip B, Yu DX, Silvis MR, Shin CH, Robinson JP, Robinson GL, Welker AE, Angel SN, Tripp SR, Sonnen JA, VanBrocklin MW, Gibbons RJ, Looper RE, Colman H, Holmen SL. Mutant IDH1 Promotes Glioma Formation In Vivo. Cell Reports. 2018;23(5):1553-1564.

Wabuyele SL, Colby JM, McMillin GA. Detection of Drug-Exposed Newborns. Therapeutic Drug Monitoring. 40(2):166-185.

DeMille D, Carlston CM, Tam OH, Palumbos JC, Stalker HJ, Mao R, Zori RT, Viskochil DH, Park AH, Carey JC. Three novel GJB2 (connexin 26) variants associated with autosomal dominant syndromic and nonsyndromic hearing loss​. American Journal of Medical Genetics. Part A. 176(4):945-950.

Shen W, Paxton CN, Szankasi P, Longhurst M, Schumacher JA, Frizzell KA, Sorrells SM, Clayton AL, Jattani RP, Patel JL, Toydemir R, Kelley TW, Xu X.Detection of genome-wide copy number variants in myeloid malignancies using next-generation sequencing. Journal of Clinical Pathology. 71(4):372-378.

Erickson JA, Grenache DG. ​Performance Evaluation of a Serum S-100B ELISA for Use with Cerebrospinal Fluid.​ The Journal of Applied Laboratory Medicine. 2:811-813.

Foster CC, Lee AY, Furtado LV, Hart J, Alpert L, Xiao SY, Hyman NH, Sharma MR, Liauw S. Treatment outcomes and HPV characteristics for an institutional cohort of patients with anal cancer receiving concurrent chemotherapy and intensity-modulated radiation therapyPLoS One. ;13(3):e0194234.

Kushnir MM, Peterson LK, Strathmann FG. Parathyroid Hormone Related Protein Concentration in Human Serum and CSF Correlates with Age. Clinical Biochemistry. 2018;52:56-60.

Christensen RD, Agarwal AM, Yaish HM, Reading NS, O'Brien EA, Prchal JT. Three Novel Spectrin Variants in Jaundiced Neonates. Clinical Pediatrics. 2018;57(1):19-26.

Frigeni M, Balakrishnan B, Yin X, Calderon FRO, Mao R, Pasquali M, Longo N. Functional and Molecular Studies in Primary Carnitine Deficiency. Human Mutation. 2017;38(12):1684-1699.

Qiang W, Antelope O, Zabriskie MS, Pomicter AD, Vellore NA, Szankasi P, Rea D, Cayuela JM, Kelley TW, Deininger MW, O'Hare T. Mechanisms of resistance to the BCR-ABL1 allosteric inhibitor asciminib. Leukemia. 2017;31(12):2844-2847.

Tolan NV, Horowitz GL, Graham CS, Hillyard D, Osburn W, Ray S. New Therapies for Treating Hepatitis C Virus: Impact on Laboratory Testing Recommendations and Clinical Management. Clinical Chemistry. 2017;63(12):1799-1805.

Tebo AE. Recent Approaches to Optimize Laboratory Assessment of Antinuclear Antibodies. Clinical and Vaccine Immunology. 2017;24(12).