ARUP's Laboratory Test Directory

Carnitine Deficiency, Primary, SLC22A5 Full Gene Sequencing : 0051682
[ image for: Patient History for Primary Carnitine]
Patient History for Primary Carnitine
  


Mnemonic: PCD FGS

Methodology: Polymerase Chain Reaction/Sequencing
Performed: Sun, Wed
Reported: 14-21 days
Specimen Required: Collect:  One 3 mL whole blood in lavender (EDTA), pink (K2EDTA), or yellow (ACD Solution A or B) tube. Also acceptable: Two T-25 flasks of cultured fibroblasts to 80% confluence. Fill flasks with culture media prior to shipment at 20-25°C. (Min: one T-25 flask). Backup cultures must be retained at the client's institution until testing is complete. If the client is unable to culture fibroblasts, this can be arranged by contacting ARUP Client Services at (800) 522-2787. Please contact ARUP's genetic counselor at (800) 242-2787 ext. 2946 prior to test submission.

Transport:  3 mL whole blood at 2-8°C. (Min: 1 mL)

Stability:  Ambient: 3 days; Refrigerated: 1 week; Frozen: Unacceptable
Interpretive Data: Background information for Primary Carnitine Deficiency:
Characteristics:
Hypoketotic hypoglycemia during periods of fasting, hepatomegaly, Reye syndrome, sudden infant death, developmental delay, cardiac and/or skeletal myopathy, hypotonia and enlarged heart.
Incidence:
1 in 40,000 for European Caucasian and Japanese, lower in other populations.
Inheritance:
Autosomal recessive.
Cause:
Deleterious SLC22A5 gene mutations causing a non-functional protein (OCTN2).
Clinical Sensitivity:
Approximately 82 percent.
Methodology:
Bidirectional sequencing of the entire coding region and intron/exon boundaries of SLC22A5 gene.
Analytical Sensitivity:
Greater than 99 percent.
Limitations:
Mutations in genes other than SLC22A5 will not be detected; large deletions, deep intronic mutations and promoter mutations in the SLC22A5 gene are not detected by this assay; analytical sensitivity may be compromised by rare primer site mutations.





Please refer to Statement C in the Compliance Statements section in the front of the Laboratory Test Directory.
CPT Code(s): 83891 Isolation; 83898 x10 Amplification; 83904 x10 Sequencing; 83909 Capillary electrophoresis; 83912 Interpretation and report. - Additional CPT code modifiers may be required for procedures performed to test for oncologic or inherited disorders.
 
 

 

 

 
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