Coronavirus Disease 2019 (COVID-19)
Resources for Clinicians and Your Patients
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SARS-CoV-2, the virus that causes COVID-19, continues to spread in the United States and many other countries, straining the capacity of healthcare systems in some states to treat patients with the infection. Older adults remain most at risk for hospitalization due to severe COVID-19 disease, but younger individuals are more responsible for the spread of infection than they were in the winter and spring of 2020.
Viral detection testing is recommended for COVID-19 diagnosis. Testing decisions should be based on local epidemiology, clinical signs and symptoms, and the course of illness. Antibody testing can be used to evaluate exposure to SARS-CoV-2, but is not recommended for diagnosis of acute illness.
Quick Answers for Clinicians
Updated November 23, 2020
Laboratory testing is the only way to distinguish between infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and other infections with similar symptoms. Furthermore, laboratory testing is the only way to determine cases of viral coinfection.1 Patients may be infected with multiple viruses at the same time, so diagnosis of infection with one respiratory virus does not exclude the possibility of infection with another virus.2,3 The National Institutes of Health (NIH) recommends cotesting to determine proper medical management if multiple viruses (eg, SARS-CoV-2, respiratory syncytial virus (RSV), and influenza A/B) are circulating, such as during flu season.1,3
Updated September 14, 2020
Viral testing for SARS-CoV-2 infection may be used for diagnostic purposes (eg, when testing individuals with symptoms consistent with COVID-19), screening purposes (eg, when testing asymptomatic individuals with known or suspected recent exposure to SARS-CoV-2), and surveillance purposes (eg, when testing asymptomatic individuals to detect transmission hot spots or characterize disease trends). Nucleic acid amplification (NAA) testing is the gold standard for detection of SARS-CoV-2 virus.4,5
Updated November 23, 2020
Yes. Some multipathogen molecular assays can detect severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).2 For example, ARUP offers a multipathogen assay that detects and differentiates COVID-19, influenza A/B, and respiratory syncytial virus (RSV). Clinicians are advised to confirm which respiratory viruses are detected by an assay before ordering. The U.S. Food and Drug Administration (FDA) maintains a list of COVID-19 assays with Emergency Use Authorization (EUA) that includes respiratory virus panels.
Updated September 14, 2020
According to the CDC, viral detection testing (eg, NAA, antigen testing) is recommended for4:
- Individuals with signs or symptoms consistent with COVID-19
- Individuals who work or reside in a nursing home or long-term care facility
- Critical infrastructure workers, health care workers, or first responders (in accordance with employer guidelines)
Diagnostic testing for asymptomatic individuals with known or suspected recent exposure to SARS-CoV-2 may also be advised.4
Local and regional health authorities may provide additional guidance for prioritizing patients for COVID-19 testing. Clinicians are also encouraged to consider testing for other causes of respiratory illness, including influenza.
Updated May 23, 2020
Antibody testing is not currently recommended to diagnose infection or to infer an individual’s immunity to the virus. It may aid in determining the rate of exposure in a given population. Antibody testing can also help identify individuals who have been exposed to SARS-CoV-2 in order to qualify potential convalescent plasma donors. COVID-19 convalescent plasma is currently being studied as a possible treatment for individuals who are critically ill with COVID-19 and as a prophylactic means of protecting individuals at high risk of exposure.6
Updated September 14, 2020
Children of all ages are at risk for COVID-19 infection, but there are relatively fewer cases of COVID-19 among children compared with adults. Children appear to present with more mild signs and symptoms than adults.7 Although severe disease is uncommon, children are still at risk of developing severe illness and complications from COVID-19. Early case studies and reports suggest that infants may be at a higher risk for severe illness from COVID-19 when compared with older children.7
It is unclear whether children are as susceptible to SARS-CoV-2 infection compared with adults. Children can transmit the virus, but data are limited as to whether they can transmit the virus as effectively as adults. Recent studies have suggested that young children (those younger than 5 years) have higher viral loads in their nasopharynxes as compared with adults8 and that children can spread the virus effectively in households and camp settings.9
Due to early community mitigation efforts and school closures, transmission of SARS-CoV-2 to and among children may have been reduced in the U.S. during the pandemic in the spring and early summer of 2020. It is possible that comparing trends in pediatric infections before and after the return to in-person school and other activities may provide additional understanding about infections in children.
Updated September 14, 2020
The CDC is investigating reports of multisystem inflammatory syndrome in children (MIS-C), a serious condition marked by inflammation that may be related to resolved COVID-19 infection.
At this time, there is limited information available about risk factors, pathogenesis, and clinical course. The CDC has issued a health advisory instructing clinicians to watch for signs and symptoms, which may include a persistent fever, elevated inflammatory markers, and multiorgan (eg, cardiac, gastrointestinal, renal) involvement.7 For more information, refer to the CDC’s case definition for MIS-C.10
Updated April 16, 2021
Nasopharyngeal (NP) specimens are the gold standard for COVID-19 viral detection. Some laboratories may accept alternative specimen types such as saliva, oropharyngeal (OP) swabs, midturbinate swabs, or anterior nares swabs.5,11 The CDC Specimen Collection Guidelines contain detailed information about EUA-approved specimen types.12 Clinicians are advised to check with their performing laboratory for specific specimen requirements.
Recent studies, including one performed by researchers at ARUP and University of Utah Health,13 found that self-collected saliva and NP swabs collected by healthcare providers are equally effective for SARS-CoV-2 detection. Both saliva and NP swabs are superior to anterior nasal swabs. The study, published in the Journal of Clinical Microbiology, represents one of the largest COVID specimen-type comparisons to date.13 However, saliva specimens are not suitable for all tests that detect SARS-CoV-2 (eg, ARUP’s multipathogen assay that detects and differentiates COVID-19, influenza A/B, and respiratory syncytial virus [RSV]).
Detection rates in specimen types vary from patient to patient and may change over the course of the illness.14 For example, because of potentially discordant shedding of virus in the upper versus the lower respiratory tract, patients with pneumonia may have negative nasal or OP samples but positive lower airway samples.15,16
Point-of-care antibody tests use fingerstick whole blood samples. Serum or plasma specimens are generally required for antibody tests that are analyzed in a laboratory.6
New April 16, 2021
Serum and plasma are the standard specimen types for COVID-19 serology testing. Most commercial assays, including those utilized at ARUP Laboratories, are only validated in these specimen types.17 Alternate specimen types, such as cerebrospinal fluid (CSF) and cord blood, are inappropriate for use in assays for which they have not been validated. Clinicians are advised to check with their performing laboratory for specific specimen requirements.
Recently, the CDC approved the use of capillary fingerstick specimen collection for some point-of-care assays. The CDC Specimen Collection Guidelines12 contain more detailed information about EUA-approved specimen types.
Which collection media is preferred for saliva specimens?
Updated September 14, 2020
Swab specimens should be collected with NP ultrafine or equivalent swabs. Dacron, polyester-tipped, or any other flocked swabs are acceptable alternatives. Calcium alginate swabs or swabs with wooden shafts are NOT acceptable due to test interference. Viral transport media and universal transport media (VTM/UTM) are the preferred collection systems for swabs. Media types that are equivalent to VTM/UTM are also acceptable.
Saliva specimens are self-collected in ARUP’s saliva collection tubes. This method reduces healthcare providers’ risk of exposure during the collection process. The patient should not eat or drink for 30 minutes prior to providing a saliva sample. Saliva should not surpass the fill line on the tube. Saliva specimens must be collected in the presence of a healthcare provider.
For more information, refer to ARUP’s COVID-19 Specimen Collection Guide.12 For alternative transport media, refer to the FDA’s guidance on specimen collection for SARS-CoV-2 molecular diagnostic testing.11
Related ARUP Consult Disease Topics
Test Manufacturer Fact Sheets
- Hologic Fact Sheet for Healthcare Providers
- Hologic Aptima Fact Sheet for Healthcare Providers
- Roche Fact Sheet for Healthcare Providers
- Thermo Fisher TaqPath Fact Sheet for Healthcare Providers
- Hologic Fact Sheet for Patients
- Hologic Aptima Fact Sheet for Patients
- Roche Fact Sheet for Patients
- Thermo Fisher TaqPath Fact Sheet for Patients
ARUP Test Information Sheet
- IDSA Diagnostic Guidelines
- Guidelines for clinicians, clinical microbiologists, patients, and policymakers
- CDC Overview of Testing for SARS-CoV-2
- Recommendations for viral and antibody testing
- National Institutes of Health (NIH) Treatment Guidelines
- Guidelines from the NIH
- IDSA Treatment Guidelines
- Practice guidelines on the treatment and management of patients with COVID-19 infection
- AACC Antibody Implementation and Interpretation Guidelines
- Guidelines for laboratories and clinicians on the implementation of serology testing
- CDC Interim Guidelines for COVID-19 Antibody Testing
- Recommendations and resources from the CDC
- CDC Antibody Testing Guidance
- Guidance on interpreting test results
- CDC Interim Guidance for Rapid Antigen Testing for SARS-CoV-2
- Guidance on appropriate use and interpretation of antigen testing
Refer to the COVID-19 Specimen Collection Guide for detailed information on specimen collection and transport media. In addition, healthcare provider fact sheets for the EUA SARS-CoV-2 NAA test offered by ARUP are available on the Test Information for Hospitals and Labs page, and specimens should be collected following the CDC’s Interim Guidelines for Collecting, Handling, and Testing Clinical Specimens for COVID-19. Healthcare providers also may find the following videos useful to help demonstrate specimen collection for SARS-CoV-2 testing.
- Nasal collection video
- Nasal/oropharyngeal collection video
- Saliva collection video
- Saliva collection video (Spanish)
COVID-19 Journal Article Publications
- A curated literature hub for tracking up-to-date scientific information, hosted by the NIH
- National Institutes of Health. Influenza and COVID-19. [Updated: Oct 22, 2020; Accessed: Apr 13, 2021]
- U.S. Department of Health and Human Services, Centers for Disease Control and Prevention. Coronavirus Disease 2019 (COVID-19). Interim clinical guidance for management of patients with confirmed coronavirus disease (COVID-19). [Updated: Feb 16, 2021; Accessed: Apr 13, 2021]
- U.S. Department of Health and Human Services, Centers for Disease Control and Prevention. Coronavirus Disease 2019 (COVID-19). Clinical questions about COVID-19: questions and answers. [Updated: Mar 4, 2021; Accessed: Apr 13, 2021]
- U.S. Department of Health and Human Services, Centers for Disease Control and Prevention. Coronavirus Disease 2019 (COVID-19). Overview of testing for SARS-CoV-2. [Updated: Mar 17, 2021; Accessed: Apr 13, 2021]
- Hanson KE, Caliendo AM, Arias CA, et al. Infectious Diseases Society of America guidelines on the diagnosis of COVID-19. [Published: Dec 23, 2020; Accessed: Apr 13, 2021]
- U.S. Department of Health and Human Services, Centers for Disease Control and Prevention. Coronavirus Disease 2019 (COVID-19). Interim guidelines for COVID-19 antibody testing. [Updated: Mar 17, 2021; Accessed: Apr 13, 2021]
- U.S. Department of Health and Human Services, Centers for Disease Control and Prevention. Coronavirus Disease 2019 (COVID-19). Healthcare workers: information for pediatric healthcare providers. [Updated: Dec 30, 2020; Accessed: Apr 13, 2021]
- Heald-Sargent T, Muller J, Zheng X, et al. Age-related differences in nasopharyngeal severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) levels in patients with mild to moderate coronavirus disease 2019 (COVID-19). JAMA Pediatr. 2020;174(9):902-903.
- U.S. Department of Health and Human Services, Centers for Disease Control and Prevention. SARS-CoV-2 transmission and infection among attendees of an overnight camp – Georgia, June 2020. MMWR. 69(31);1023-1025.
- U.S. Department of Health and Human Services, Centers for Disease Control and Prevention. Information for healthcare providers about multisystem inflammatory syndrome in children (MIS-C). [Last reviewed: Feb 17, 2021; Accessed: Apr 13, 2021]
- U.S. Department of Health and Human Services, Food and Drug Administration. FAQs on testing for SARS-CoV-2. [Last reviewed: Mar 25, 2021; Accessed: Apr 13, 2021]
- U.S. Department of Health and Human Services, Centers for Disease Control and Prevention. Specimen collection. [Updated: Feb 26, 2021; Accessed: Apr 13, 2021]
- Hanson KE, Barker AP, Hillyard DR, et al. Self-collected anterior nasal and saliva specimens versus healthcare worked-collected nasopharyngeal swabs for the molecular detection of SARS-CoV-2. J Clin Microbiol. 2020;58(11):e01824-20.
- Wang W, Xu Y, Gao R, et al. Detection of SARS-CoV-2 in different types of clinical specimens. JAMA. 2020;323(18):1843-1844.
- Patel R, Babady E, Theel ES, et al. Report from the American Society for Microbiology COVID-19 International Summit, 23 March 2020: value of diagnostic testing for SARS-CoV-2/COVID-19. mBio. 2020;11(2):e00722-20.
- National Institutes of Health. COVID-19 treatment guidelines: laboratory diagnosis. [Updated: Feb 11, 2021; Accessed: Apr 13, 2021]
- Zhang YV, Wiencek J, Meng QH, et al. AACC practical recommendations for implementing and interpreting SARS-CoV-2 EUA and LDT serologic testing in clinical laboratories. Clin Chem. 2021 [Published online ahead of print Mar 2021].
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